Start out by reading through
www.accordionrevival.com to get to know the accordion inside out.
Then, for tuning you will need "sweet" files (sharp and with fine grain), a sharp scratcher, and a thin flat piece of metal (like a feeler guage).
When you are filing, support the reed with the flat metal, and when scratching, support the inner reed from underneath with the file so it doesn't bend and support the outer reed with the flat metal.
Create a table on which you can write down all the deviations you measure while playing each note, and then use that table to do a bit of filing or scratching as needed. Then play every note again and write down the deviations. When you are careful and go easy on the filing or scratching you should get where you want within about five rounds of measuring and tuning.